PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g051380.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 502aa    MW: 55822.3 Da    PI: 6.6918
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g051380.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.87.1e-10221277155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++  g  rk  + g ++ +++Aa+ ++ a++k++g
  Solyc05g051380.2.1 221 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqARKGRQ-GGYDKEDKAARSYDLAALKYWG 277
                         57*******************88885555446666.7799999*************98 PP

2AP249.41.1e-15322371355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Solyc05g051380.2.1 322 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 371
                         9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-7221277IPR001471AP2/ERF domain
CDDcd000188.03E-19221287No hitNo description
SuperFamilySSF541711.96E-13221287IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.9E-11222286IPR001471AP2/ERF domain
PROSITE profilePS5103216.977222285IPR001471AP2/ERF domain
SMARTSM003802.0E-20222291IPR001471AP2/ERF domain
PRINTSPR003673.3E-6223234IPR001471AP2/ERF domain
CDDcd000185.34E-11320379No hitNo description
SuperFamilySSF541718.5E-18320380IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-18321379IPR001471AP2/ERF domain
PROSITE profilePS5103219.335321379IPR001471AP2/ERF domain
SMARTSM003803.1E-30321385IPR001471AP2/ERF domain
PfamPF008475.5E-10322371IPR001471AP2/ERF domain
PRINTSPR003673.3E-6361381IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MAPENNNWLS FSLSSMEMLN SSSSSSSMLQ SNAPSAPTHQ YYFADNFYPH GWMNVPKTHE  60
LMYSGDEKQI YHPNVFIDSQ IIHHQHHHHP PPKLEDFFGG ETETQDSSSL THIYDHHHHH  120
GGGAAAGDGG YFNNGQQDVN HNYSIAVGGF QTLPTNSGSE VDDSQVMGSE FATESSNEIY  180
PPIITLGVNN NSNTNSEKAI VTAVNSEGCK KITDTFGQRT SIYRGVTRHR WTGRYEAHLW  240
DNSCKREGQA RKGRQGGYDK EDKAARSYDL AALKYWGTTA TTNFPASDYT KEIEEMKHMT  300
KQEFIASLRR KSSGFSRGAS MYRGVTRHHQ QGRWQARIGR VAGNKDLYLG TFATEEEAAE  360
AYDIAAIKFR GLNAVTNFEM NRYDVEAIMK SSLPIGGAAK RLKISLESEQ KQSLNDNYQQ  420
TLHNGVNNSS SNNSINFGAI SPVSAIPCGL PFDANQPYYH HSFFPHLQYS SNDGGASDHT  480
SGTMPLLPPP AEIFIWPHQS Y*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240254.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-155AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLK4C1G90.0K4C1G9_SOLLC; Uncharacterized protein
STRINGSolyc05g051380.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-136AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]